First question i would have is.. does it fit like this when the rubber is out? I think it does.. If that's the case i would leave it out, loosen all the screws from the stainless part and close the door carefull then see if you can align it with the glass down.. be careful not to break the glass. Then open the door careful and fasten the lower screws and test if the door still fits. you can fasten the screws lightly and still change the fitment in the dooropening.. fidle with it take your time.
I wouldn't bend the stainless, when i take a look at your foto it's repairable by only make a adjustment in the setting of the screws.. they are made for these adjustment, they can make the top shift for half an inch or even a bit more i think? above all, take your time and if you are scared to do something like this take out the glass.. but that's a lot of work.