I ended up using brake parts cleaner, I mistakenly grabbed it instead of my throttle body cleaner, hopefully this wasn't a mistake. At any rate I cleaned the threads with a wire cone brush.
It turned out that most had to be tapped. So I ran the M10 1.50 tap with some oil on it and ended up pulling a slight amount of crud out.
The one thing I'm not too sure about is the fact that some head bolts thread all the way to the end of their threads, and some do not. It doesn't seem right, but perhaps it is, and I just don't know.
Is this correct, or do I need to get in there and give it a bit more force? I am careful not to torque too hard on it, but at the same time give it enough force to feel like it's bottoming out.
Edit: I have all of the old head bolts, and compared them lengthwise to the new Nissan set. The old bolts are the same length as the new ones, hopefully removing the possibility that the tips of some are broken off and sitting at the bottoms of the holes.